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    <title>DSpace Collection:</title>
    <link>http://theses.ncl.ac.uk/jspui/handle/10443/517</link>
    <description />
    <pubDate>Wed, 04 Feb 2026 14:14:51 GMT</pubDate>
    <dc:date>2026-02-04T14:14:51Z</dc:date>
    <item>
      <title>Cell wall-deficiency in Staphylococcus aureus and its role in antibiotic resistance</title>
      <link>http://theses.ncl.ac.uk/jspui/handle/10443/1671</link>
      <description>Title: Cell wall-deficiency in Staphylococcus aureus and its role in antibiotic resistance
Authors: Fuller, Elizabeth R
Abstract: Cell Wall-Deficiency in Staphylococcus aureus and its Role in Antibiotic Resistance.&#xD;
Elizabeth R. Fuller.&#xD;
Cell wall-deficient bacteria (CWDB) induced from Staphylococcus aureus&#xD;
ATCC 9144 (Oxford strain) were generated on medium with elevated osmolality in&#xD;
the presence of sublethal levels of penicillin G. On removal of antibiotic pressure the&#xD;
cell wall-competent (CWC) revertants along with these CWDB exhibited high-level&#xD;
penicillin and methicillin resistance, which was stable in the revertants. The revertants&#xD;
looked visually different, had an altered Gram stain and growth rate. Their matrixassisted&#xD;
laser desorption/ionisation time-of-flight (MALDI-TOF) `fingerprint' was&#xD;
also altered and they were more resistant to lysis by lysostaphin in comparison to the&#xD;
wild-type. Reversed-phaseh igh-performance liquid chromatography( RP-HPLC)&#xD;
showed that the revertants' cell walls had shorter glycan chains and more&#xD;
pentaglycine cross-bridges.&#xD;
A rapid,r eproduciblem ethodu sing liquid mediaw ase stablishedu singt he&#xD;
same medium and sublethal levels of penicillin G. The revertants produced using this&#xD;
method had the same characteristics as those cells produced from the original method.&#xD;
The high-level resistance seen in the revertants was homogenous and confirmed to be&#xD;
due to the transient CWD state, along with not being strain-specific. Transmission&#xD;
electron microscopy showed that the CWD cells and the revertant cells, when grown&#xD;
in penicillin, had a very disordered cell wall with areas where the cell wall appeared&#xD;
absent and were indistinguishable.&#xD;
The revertant cells were mecA-negative,ß -lactamase-negativea nd did not&#xD;
contain any mutations in the coding regions of pbp genes. The CWD cells and&#xD;
revertant cells, when grown in penicillin, were resistant to lysis by lysostaphin but&#xD;
were very sensitive to lysis with Triton X- 100. These data indicate that the resistant&#xD;
cells are not dependent upon an intact cell wall for osmotic stability and they are able&#xD;
to switch readily to this mode of growth in the presence of penicillin G.
Description: MD</description>
      <pubDate>Tue, 01 Jan 2008 00:00:00 GMT</pubDate>
      <guid isPermaLink="false">http://theses.ncl.ac.uk/jspui/handle/10443/1671</guid>
      <dc:date>2008-01-01T00:00:00Z</dc:date>
    </item>
    <item>
      <title>Studies on whole-body nitrogen turnover, protein synthesis and breakdown in man using 15N glycine</title>
      <link>http://theses.ncl.ac.uk/jspui/handle/10443/1666</link>
      <description>Title: Studies on whole-body nitrogen turnover, protein synthesis and breakdown in man using 15N glycine
Authors: Clarke, David
Abstract: The experimental work described in this thesis was conducted in the surgical research&#xD;
laboratories of Dr Francis D. Moore in the Peter Bent Brigham Hospital (now the&#xD;
Brigham &amp; Women's Hospital) Boston, Massachusetts, USA, between 1978-1979. It&#xD;
formed part of an ongoing programme of research into protein metabolism in man;&#xD;
specifically to measure total body nitrogen turnover and hence protein synthesis and&#xD;
breakdown, initially in normal volunteers receiving various intravenous feeding regimens,&#xD;
and subsequently in patients. The previous year, 1977, had seen the publication of&#xD;
'Substrate Interaction in Intravenous Feeding' by Bruce Wolfe et al., from the same&#xD;
laboratories. This was an extensive piece of work incorporating many studies and&#xD;
compared nitrogen balance data together with biochemical, hormonal and plasma amino&#xD;
acid data in normal men fed intravenously with a variety of regimens.&#xD;
Shortly afterwards a series of protein turnover studies was embarked upon, using the uN&#xD;
glycine method, and in collaboration with Dr Vernon Young of the Massachusetts Institute&#xD;
of Technology. The first experiments were essentially a repeat of the studies described by&#xD;
Wolfe et al. (vide supra) but in addition nitrogen turnover, protein synthesis and&#xD;
breakdown were estimated using a continuous 60 hour infusion of uN glycine and&#xD;
measuring enrichment of urinary urea with uN when a plateau was reached. Normal&#xD;
volunteers were studied firstly on normal oral diet and then on a&#xD;
iv&#xD;
succession of intravenous regimens:- amino acids alone (AA), amino acids plus 'high dose'&#xD;
glucose (AA + HOG), amino acids plus fat emulsion (AA + FE), amino acids plus 'low&#xD;
dose' glucose (AA + LOG), amino acids, fat emulsion and low dose glucose&#xD;
(AA + LDG+ FE), and finally 'low dose' glucose alone (LOG).&#xD;
The studies on normal diet, AA and AA+HOG were conducted by Andrew Sim (a&#xD;
Glasgow/Harvard exchange fellow) and Bruce Wolfe. The author took no practical role in&#xD;
these experiments, but was responsible for analysis of the data and the protein metabolism&#xD;
calculations, and was a co-author when the work was published in 1979 (Sim et al.,&#xD;
Glucose Promotes Whole-Body Protein Synthesis from Infused Aminoacids in Fasting&#xD;
Man, Lancet i, 68-71).&#xD;
Subsequently, the author did the experiments using AA + LOG + FE, AA + FE, and&#xD;
AA + LOG and LOG. The results on these four regimens were incorporated in a paper&#xD;
presented in 1979 at the Tripartite Meeting of the Surgical Research Society at Oxford&#xD;
under the title 'Isotope Studies of substrate interaction in parenteral nutrition', and also at&#xD;
the 2nd European Congress on Parenteral and Enteral Nutrition at Newcastle upon Tyne in&#xD;
1980, and later published as 'The Effect of Fat Infusion on Protein Metabolism' (Acta.&#xD;
Chir. Scand., Suppl. 507, 475-484, 1981). When the studies on the various intravenous&#xD;
feeding regimens were completed, attention was turned to the possible distorting effects of&#xD;
variables such as exercise and diet&#xD;
v&#xD;
on the behaviour of the isotope equilibrium curve and plateau. Such effects, if present,&#xD;
might have significance when studies were carried out on patients at a later stage in the&#xD;
research programme. Because each study lasted 48-60 hours, changes might occur either&#xD;
unintentionally or as a result of the needs of clinical management, and if they affected the&#xD;
plateau would alter the resultant calculations of turnover, synthesis and breakdown. Such a&#xD;
potential source of error clearly needed investigation.&#xD;
A pilot study was done in two subjects, later repeated on each, to observe any effects on&#xD;
the curve and plateau of both doubling protein intake and bicycle exercise. Subsequently,&#xD;
more extensive studies were done varying the protein and energy intakes, both orally and&#xD;
intravenously, allowing a detailed analysis of curve perturbation, and introducing the&#xD;
concept of basal catabolic rate.&#xD;
Finally, protein turnover, synthesis and breakdown were estimated seven times in four&#xD;
seriously ill patients.&#xD;
All of the studies mentioned above form the basis of the thesis. Unfortunately, the&#xD;
gestation period of this thesis has been long. There are two main reasons for this. Firstly,&#xD;
the work done was part of a five-year programme of research, with the intention of&#xD;
publishing a paper in a scientific journal at the completion of each stage. This was done&#xD;
vi&#xD;
with the first three regimens (normal diet, AA and AA + HDG) but not with the last four&#xD;
(AA + FE, AA + LOO+ FE, AA + LOG, LDG), although the results were presented at two&#xD;
scientific meetings. Shortly after returning to the United Kingdom the author was&#xD;
appointed a consultant surgeon and this career move assumed priority. Secondly, although&#xD;
it was intended to publish the perturbation studies, it proved impossible to reduce the size&#xD;
of the text to a manageable level suitable for publication in the form of a scientific paper.&#xD;
However, despite the long interval since the experiments were done, no similar work has&#xD;
been published. In particular, virtually no attention has been paid to intentional&#xD;
perturbation. Also, whereas there was a spate of interest in protein turnover studies in the&#xD;
late 1970s and early 1980s, virtually no publications have appeared since 1985. It seems&#xD;
that the potential applications of the method are considered exhausted, and interest has been&#xD;
lost, rather as it was in the 1950s following a short flurry of activity exploring the first&#xD;
cumbersome technique. Hence, it seemed all the more pertinent, even at this late stage, to&#xD;
publish the work in the form of a thesis which could describe in chronological order the&#xD;
continuum of studies as briefly mentioned above. In order to preserve such a progression,&#xD;
the following Introduction contains, with few exceptions, only references up to the time&#xD;
that the experimental studies were commenced, 1978, but the subsequent Discussion(s) in&#xD;
the various sections will attempt to include the relevant literature up to the present time.
Description: M.D.</description>
      <pubDate>Sat, 01 Jan 1994 00:00:00 GMT</pubDate>
      <guid isPermaLink="false">http://theses.ncl.ac.uk/jspui/handle/10443/1666</guid>
      <dc:date>1994-01-01T00:00:00Z</dc:date>
    </item>
    <item>
      <title>Functional analysis of TSPY and its role in prostate carcinogenesis</title>
      <link>http://theses.ncl.ac.uk/jspui/handle/10443/905</link>
      <description>Title: Functional analysis of TSPY and its role in prostate carcinogenesis
Authors: Omar, Mahmoud Mustafa
Abstract: Testis specific protein Y chromosome encoded (TSPY) is a multicopy gene located on&#xD;
the human Y chromosome. It has been reported that the human genome harbours&#xD;
between 20 to 40 copies of the gene. Mammalian homologues of human TSPY were&#xD;
also found to be repetitive. The gene is expressed in human foetal and adult testis. The&#xD;
precise function of the expressed TSPY gene product is not fully defined, but it has&#xD;
been postulated to regulate proliferation of testicular spermatogonia. Up-regulation of&#xD;
TSPY expression has been detected in gonadoblastoma, testicular cancer and prostate&#xD;
cancer. The contribution of abnormal expression of TSPY to prostate carcinogenesis&#xD;
has not been investigated. Prostate cancer (CaP) and benign prostate hyperplasia&#xD;
(BPH) are the most common diseases of the human prostate. Prostate cancer is a&#xD;
disease of the elderly and is the second most common cancer and second most&#xD;
common cause of death from cancer among men in UK.&#xD;
In this thesis, the role of TSPY in prostate carcinogenesis was studied in four related&#xD;
aspects. First, TSPY protein and transcript expression pattern in CaP compared to&#xD;
Benign Prostate Hyperplasia (BPH) was studied using a combination of&#xD;
immunohistochemistry and mRNA in situ hybridisation. Second, the ability of TSPY&#xD;
to regulate cellular proliferation was investigated by transfection experiments of the&#xD;
prostate cancer LNCaP cell line. Third, TSPY genomic copy number in prostate&#xD;
cancer was characterised and compared to BPH. Finally, the downstream genes&#xD;
regulated by TSPY were investigated using high density microarray gene profiling&#xD;
method.&#xD;
An anti-human TSPY polyclonal antibody was developed for immunodetection of&#xD;
TSPY expression level in resected prostate tissues. In total, 72 cases of patients with&#xD;
prostate cancer and 20 cases of patients affected with BPH were studied by&#xD;
immunohistochemistry. TSPY was predominantly detected in the prostatic epithelium.&#xD;
In the benign gland, TSPY expression was limited to the basal cells compartment.&#xD;
TSPY expression was significantly up-regulated in prostate cancer when compared to&#xD;
BPH (P&lt;0.0001). Furthermore, increased TSPY expression level was associated with&#xD;
aggressive disease (tumour with high Gleason score; P&lt;0.02) and the presence of&#xD;
bone metastasis at the time of diagnosis (P&lt;0.028). To address the functional role of&#xD;
3&#xD;
TSPY in prostate cancer, FLAG-TSPY was cloned and stably transfected into LNCaP&#xD;
cells. The presence of transfected TSPY increased LNCaP proliferation by two fold&#xD;
compared to empty vector control, consistent with a mitogenic function in CaP&#xD;
(P&lt;0.0001).&#xD;
An absolute quantitative real time PCR based on Taqman assay was established and&#xD;
validated. TSPY genomic copy number was determined from comparing 161 samples:&#xD;
CaP-serum (n=47), resected tumour (n=31); BPH-serum (n=27), resected prostate&#xD;
(n=13) and control-serum (n=45). Of the clinical samples analysed, interpersonal&#xD;
variability of TSPY copy numbers was observed with the majority of cases containing&#xD;
between 20 to 50 TSPY copies per genome. Although, there were variability in TSPY&#xD;
copy numbers among individuals, there was no statistically significant correlation&#xD;
between TSPY copy number (serum and prostatic tissue) and the development of&#xD;
prostate cancer.&#xD;
Studying LNCaP stably transfected with TSPY and empty vector control, the key&#xD;
genes mediating the functional effect of TSPY were identified using Affymetrix&#xD;
oligonucleotide microarray method. In total, 332 genes have been altered 1.5 to 90&#xD;
fold due to the effect of TSPY over-expression. Ten genes were selected and the gene&#xD;
expression levels were confirmed using semi-quantitative RT-PCR method. Gene&#xD;
clustering analysis has indicated changes in genes that regulate cellular differentiation&#xD;
(NRDG1, NF2, C-MAF and BMP11), apoptotic gene (BAX), cell cycle gene (cyclin&#xD;
G), detoxification gene (GST-2A) and genes linked to adhesion (PCDH7a, PLOD2&#xD;
and IRS 1).&#xD;
In summary, TSPY is over-expressed in prostate cancer. This abnormal expression is&#xD;
linked to prostate cancer progression and metastasis. The up-regulation of TSPY&#xD;
expression is unlikely to be due to increased copy number. Expression of exogenous&#xD;
TSPY in prostate cancer cells enhanced cellular proliferation. The gene meditates its&#xD;
effect by down-regulating the expression pattern of selected differentiation, apoptosis&#xD;
and adhesion genes. Hence, over-expression of TSPY contributes to prostate&#xD;
carcinogenesis.
Description: PhD Thesis</description>
      <pubDate>Sat, 01 Jan 2005 00:00:00 GMT</pubDate>
      <guid isPermaLink="false">http://theses.ncl.ac.uk/jspui/handle/10443/905</guid>
      <dc:date>2005-01-01T00:00:00Z</dc:date>
    </item>
    <item>
      <title>The role of interleukin-17 and RANKL in the regulation of bone destruction in arthritis</title>
      <link>http://theses.ncl.ac.uk/jspui/handle/10443/866</link>
      <description>Title: The role of interleukin-17 and RANKL in the regulation of bone destruction in arthritis
Authors: Abusrer, Salma
Abstract: Arthritis is a common disease               characterised by chronic inflammation as well as bone and&#xD;
cartilage destruction. Proinflammatory      cytokines such as interieukin-17( IL-17), aT cell derived&#xD;
cytokine, and Oncostatin M (OSM) a microphage cytokine, are elevated in&#xD;
rheumatoid arthritis (RA). The aim of this study was to characterise the effects of IL-17&#xD;
and OSM on the expression of receptor       activator of NF-kappaBl and (RANKL) and its&#xD;
decoy receptoro steoprotegeri(nO PG)by mesenchymalil neage cells in vitro, in particular&#xD;
synovial fibroblasts and the human          osteo sarcoma cell line (MG-63 and SaOS-2)   that are&#xD;
potentially involved in this process as they regulate osteoclastogenesis. In addition, the&#xD;
ability of IL-17 to support                 osteoclastogenesinis vitro was assessed.&#xD;
Human synovial fibroblasts( SFB)from RA and OA patients were contrasted with cell lines&#xD;
MG-63 and SaOS-2 and were treated with IL-17 and/or OSM for up to 48 hr. The&#xD;
expression and production of RANKL and OPG over a time course was assessed in these&#xD;
cells. To investigate                       osteoclastogenesis peripheral blood          mononuclea cells (PBMCs)were&#xD;
cultured with IL-17 either alone or with Macrophage colony stimulating factor (M-CSF).&#xD;
Osteoclastogenesis was analyzed after 21 days by tartrate-resistant acid phosphatase&#xD;
(TRAP),positive multinucleated cell counts, and resorption of ivory slices.&#xD;
This study demonstrated a direct role for IL- 17 in bone and cartilage catabolism        through the&#xD;
induction of RANKL and OPG mRNA levels at 6 hr and 48 hr in SFB RA and OA, MG-63&#xD;
and SaOS-2. Furthermore the combination of IL-17 and OSM showed that the expression&#xD;
of RANKL and OPGw as down-regulated. Co-incubation of IL-17 with or without M-CSF&#xD;
significantly enhanced TRAP+ve              multinucleated cell formation. Furthermore cultures of&#xD;
PBMC with IL-17 on ivory slices showed      significantly increased resorption and when cocultured&#xD;
with synovial fibroblasts from RA and OA patients further significant resorption.&#xD;
The addition of OPG to IL-17 cultures significantly inhibited the formation of resorption&#xD;
lacunae. The effect of IL-17 on bone resorption in vitro is mostly RANKL-dependent.&#xD;
This finding may lead to the conclusion     that IL-17 significantly induces        &#xD;
osteoclasto genesis&#xD;
in vitro. Therefore,I L-17 represents a key cytokine involved in the exacerbation of&#xD;
inflammatory joint disease and is an important target for anti-cytokine&#xD;
therapies. Also&#xD;
these results provide proof of the concept that OPG production can result in effective&#xD;
therapies.
Description: PhD Thesis</description>
      <pubDate>Thu, 01 Jan 2004 00:00:00 GMT</pubDate>
      <guid isPermaLink="false">http://theses.ncl.ac.uk/jspui/handle/10443/866</guid>
      <dc:date>2004-01-01T00:00:00Z</dc:date>
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